While our group is focused on asking questions about the physical principles that guide biology, many of our simulations visualize quite well. Below are some videos of recent simulations. There are also downloadable versions of related movies available on the SMOG server.
Simulation of subunit rotation in the ribosome (Levi, et al. Biophysical Journal, 2017)
Simulation of mRNA-tRNA translocation (Nguyen and Whitford, Nature Communications, 2016)
One-microsecond explicit-solvent simulation of the ribosome (Whitford et al. PLoS Computational Biology, 2013)