Slavov lab | Quantitative Systems Biology
Seeking  principles
in the coordination among protein synthesis, metabolism, cell growth and differentiation
Emmott EP, Jovanovic M, Slavov N. (2018)
Ribosome stoichiometry: from form to function
Trends in Biochemical Sciences (in press)   preprint   |   PDF   |   Summary
Malioutov D., Chen T., Jaffe J., Airoldi E., Budnik B., Slavov N. (2018)
Quantifying homologous proteins and proteoforms
Molecular & Cellular Proteomics   preprint   |   PDF   |   HIquant server
Budnik B., Levy E., Harmange G., Slavov N. (2018)
SCoPE-MS: mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation
Genome Biology 19:161   preprint   |   PDF   |   Data   |   CSHL Talk   |   Highlight
Levy E, Slavov N. (2018)
Single cell protein analysis for systems biology
Essays in Biochemistry   preprint   |   PMC   |   PDF   |   Summary
Specht H, Slavov N. (2018)
Transformative opportunities for single cell proteomics
J. of Proteome Res., 17 (8), 2565 - 2571   preprint   |   PMC   |   PDF   |   Highlight
Franks A., Airoldi E., Slavov N. (2017)
Post-transcriptional regulation across human tissues
PLoS Comput Biol, 13(5): e1005535   preprint   |   PDF   |   Data Web   |   Highlight
Slavov N. (2015)
Making the most of peer review
eLife, 4:e12708   PDF
Slavov N., Semrau S., Airoldi E., Budnik B., van Oudenaarden A. (2015)
Differential stoichiometry among core ribosomal proteins
Cell Reports, vol. 13   PDF   |   SI   |   Data Web   |   Summary   |   TiBS Spotlight
Malioutov D., Slavov N. (2014)
Convex Total Least Squares
JMLR, W&CP vol. 32,   PDF   |   Summary
Slavov N., Budnik B., Schwab D., Airoldi E., van Oudenaarden A. (2014)
Constant Growth Rate Can Be Supported by Decreasing Energy Flux and Increasing Aerobic Glycolysis
Cell Reports, vol. 7,   PDF   |   SI   |   Data   |   Summary   |   Cell Press Q & A
Slavov N., Carey, J., Linse S. (2013)
Calmodulin transduces Ca+2 oscillations into differential regulation of its target proteins
ACS Chemical Neuroscience, vol. 4 (4)   PDF   |   Highlight Summary
Slavov N., van Oudenaarden A. (2012)
How to Regulate a Gene: To Repress or to Activate?
Mol. Cell, vol. 46, issue 5, 551-552   PDF
Slavov N., Airoldi E.M., van Oudenaarden A., Botstein D. (2012)
A Conserved Cell Growth Cycle Can Account for the Environmental Stress Responses of Divergent Eukaryotes
Mol. Biol. Cell, vol. 23, no. 10   PDF   |   Summary
Slavov N., Macinskas J., Caudy A., Botstein D. (2011)
Metabolic Cycling without Cell Division Cycling in Respiring Yeast
PNAS, vol. 108, 19090-19095   PDF   |   SI   |   Data Web   |   Summary
Slavov N., Botstein D. (2011)
Coupling among Growth Rate Response, Metabolic Cycle and Cell Division Cycle in Yeast
Mol. Biol. Cell, vol. 22   PDF   |   Data Web   |   MBoC Highlight
Silverman SJ., Slavov N., Petti A., Parsons L., Briehof R., Thiberge S., Zenklusen D., Gandhi SJ., Larson D., Singer R., Botstein D. (2010)
Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate
PNAS, vol. 107   PDF   |   Summary   |   F1000
Tagkopoulos I., Slavov N., Kung S. (2005)
Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks
IEEE Symposium on Bioinformatics and Bioengineering   PDF

Chen A, Franks A, Slavov N. (2018)
DART-ID increases single-cell proteome coverage
bioRxiv   DOI: 10.1101/399121   PDF   |   RAW Data @ MassIVE   |   GitHub
Specht H, Harmange G, Perlman DH, Emmott E, Niziolek Z, Budnik B, Slavov N. Automated sample preparation for high-throughput single-cell proteomics
bioRxiv   DOI: 10.1101/399774   PDF   |   RAW Data @ MassIVE   |   SCP2018 Talk
Emmott EP, Jovanovic M, Slavov N. (2018)
Ribosome stoichiometry: from form to function
PeerJ, 6:e26991v1   PDF   |   Summary
Levy E, Slavov N. (2018)
Single cell protein analysis for systems biology
PeerJ, 6:e26965v1   PDF   |   Summary
Malioutov D., Chen T., Jaffe J., Airoldi E., Carr S., Budnik B., Slavov N. (2017)
Quantifying homologous proteins and proteoforms
bioRxiv   PDF   |   HIquant server
van den Berg P., Budnik B., Slavov N., Semrau S. (2017)
Dynamic post-transcriptional regulation during embryonic stem cell differentiation
bioRxiv   PDF   |   Data Web
Franks A., Airoldi E., Slavov N. (2016)
Post-transcriptional regulation across human tissues
bioRxiv   PDF   |   Data Web
Slavov N., Semrau S., Airoldi E.M., Budnik B., van Oudenaarden A. (2014)
Differential stoichiometry among core ribosomal proteins
bioRxiv, PDF   |   Summary   |   Data Web   |  

Slavov N. (2018)
We Must Demand Evidence of Peer Review
The Scientist   PDF
Slavov N. (2015)
Making the most of peer review
eLife, 4:e12708   PDF
Slavov N. (2014)
Tell me about the science, not the prizes!
The Scientist   PDF
Slavov N. (2013)
The Best Projects Are Least Obvious
The Scientist   PDF
Slavov N. (2012)
The Mission of MIT
The MIT Tech   PDF

✉ Corresponding Author(s)
☯ These authors contributed equally